BLAST2SRS, a web server for flexible retrieval of related protein sequences in the SWISS-PROT and SPTrEMBL databases
AUTOR(ES)
Bimpikis, Konstantinos
FONTE
Oxford University Press
RESUMO
SRS (Sequence Retrieval System) is a widely used keyword search engine for querying biological databases. BLAST2 is the most widely used tool to query databases by sequence similarity search. These tools allow users to retrieve sequences by shared keyword or by shared similarity, with many public web servers available. However, with the increasingly large datasets available it is now quite common that a user is interested in some subset of homologous sequences but has no efficient way to restrict retrieval to that set. By allowing the user to control SRS from the BLAST output, BLAST2SRS (http://blast2srs.embl.de/) aims to meet this need. This server therefore combines the two ways to search sequence databases: similarity and keyword.
ACESSO AO ARTIGO
http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=168942Documentos Relacionados
- The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL.
- The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998.
- The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999.